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    39 repositories

    • PhysiCore

      Public
      PhysiCore — The next generation of PhysiCell: modular, fast, and future-ready.
      C++
      •
      MIT License
      •0•4•22•3•Updated Dec 19, 2025Dec 19, 2025

    • SHDC

      Public
      SHDC shiny
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • ags_synergy_paper

      Public
      C++
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • mutPhysiBoSS

      Public
      Jupyter Notebook
      •112•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • BioFVM-B

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • rgenexcom

      Public
      Web application for the Manuscript "From Comorbidities to Gene Expression Fingerprints and Back"
      R
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Aug 5, 2025Aug 5, 2025

    • ContextMirror2.0

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • mteapy

      Public
      Python library for Metabolic Task Enrichment Analysis.
      Python
      •
      Other
      •0•0•1•0•Updated Jul 12, 2025Jul 12, 2025

    • neurodegenerative_diseases-cancer_comorbidities

      Public
      ShinyApp for the visualisation of the pathways associated with neurodegenerative disorders (Alzheimer's and Parkinson's diseases), different types of cancer, and their comorbidity relations
      R
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Jul 11, 2025Jul 11, 2025

    • DDInteract

      Public
      Shiny app to visualise drug-drug interactions in Blumenau, Catalonia and Indianapolis
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

    • Human-GEM

      Public
      The generic genome-scale metabolic model of Homo sapiens
      MATLAB
      •
      Creative Commons Attribution 4.0 International
      •56•1•0•0•Updated May 24, 2025May 24, 2025

    • ml4br-ml-course

      Public
      Materials of Machine Learning course delivered by ML4BMR Unit @bsc
      Jupyter Notebook
      •2•6•0•0•Updated May 23, 2025May 23, 2025

    • PhysiViz

      Public
      Collection of tools for multiscale simulation visualization in 2D and 3D.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • Bojos_supercomputacio

      Public
      Bojos per la Supercomputació es un curso desarrollado por el BSC y está enmarcado en el programa Bojos per la Ciència, de la Fundació Catalunya la Pedrera.
      Jupyter Notebook
      •2•0•0•0•Updated Mar 15, 2025Mar 15, 2025

    • CompBio-handbook

      Public
      This handbook is a welcome guide with tips, tricks and possible questions if you just joined the Computational Biology group
      0•2•0•0•Updated Jan 16, 2025Jan 16, 2025

    • PhysiBoSS_projects

      Public
      This repo contains all the PhysiBoSS projects developed by PhD and postdocs from the computational biology group
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • PhysiCell

      Public
      PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
      Jupyter Notebook
      •112•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • te-epidemics

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • tda_analysis

      Public
      R
      •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • MMCAcovid19.jl

      Public
      Microscopic Markov Chain Approach to model the spreading of COVID-19
      Julia
      •
      GNU Affero General Public License v3.0
      •9•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • biohackathon_germany_2023

      Public
      Project "Is Sex Representation In Biological Research Experiments Adequately Funded?: A Study of the European Database CORDIS"
      Jupyter Notebook
      •0•1•0•0•Updated Mar 12, 2024Mar 12, 2024

    • penguin_analytics

      Public
      PENGUIN Dash web app
      Python
      •0•0•0•0•Updated Oct 24, 2023Oct 24, 2023

    • penguin_software

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Oct 24, 2023Oct 24, 2023

    • IID-2018-cancer-PPIs-comparison

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 6, 2023Apr 6, 2023

    • Explainable_Synthetic_Data_Generation_Medulloblastoma

      Public
      Explainable synthetic data generation for paediatric cancer research
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jun 22, 2022Jun 22, 2022

    • PhysiBoSSv2

      Public
      PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
      C++
      •112•1•0•0•Updated May 18, 2022May 18, 2022

    • multiAffinity

      Public
      Study how gene dysregulation propagates on a multilayer network
      rna-seqcommunity-detectionnetworkscommand-line-tool
      C
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • spheroid-tnf-v2-emews

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Mar 22, 2022Mar 22, 2022

    • MeSH_bias

      Public
      MeSH terms about 'bias' to identify related PubMed articles
      Jupyter Notebook
      •0•0•0•0•Updated Dec 27, 2021Dec 27, 2021

    • IGTP_biomarker_study

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 22, 2021Dec 22, 2021