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    21 repositories

    • npmrd_curator

      Public
      Backend + Frontend for NP-MRD curation web tools
      JavaScript
      •
      MIT License
      •0•2•0•0•Updated Dec 18, 2025Dec 18, 2025

    • relationext

      Public
      The package for the relation_extraction repo code.
      Python
      •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • madbyte

      Public
      Metabolomics And Dereplication By Two-dimensional Experiments - MADByTE NMR Metabolomics Platform
      pythonnmrmetabolomics
      Python
      •
      MIT License
      •1•11•5•0•Updated Jul 23, 2025Jul 23, 2025

    • apvalidation

      Public
      The apvalidation python package. Installed via pip (check READme)
      Python
      •0•0•1•0•Updated Jul 4, 2025Jul 4, 2025

    • npanalyst

      Public
      Tool-chain for relating metabolite MS data with bio-activity data. Hosted at www.npanalyst.org
      Python
      •
      MIT License
      •1•4•0•0•Updated Feb 26, 2025Feb 26, 2025

    • mvpaShiny

      Public
      Multivariate Pattern Analysis (mvpa) R shiny package
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • snapms

      Public
      core code for the SNAP MS platform for predicting identities of natural products from MS data
      Python
      •
      MIT License
      •2•1•2•0•Updated Jan 13, 2024Jan 13, 2024

    • mvpa

      Public
      Multivariate Pattern Analysis (MVPA) R package
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 20, 2023Dec 20, 2023

    • mvpaShiny_documentation

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Dec 20, 2023Dec 20, 2023

    • article-pipeline-docs

      Public
      A public repository to host a documentation page for the article_pipeline
      MIT License
      •0•0•1•0•Updated Oct 16, 2023Oct 16, 2023

    • MultiplexMS

      Public
      MultiplexMS - Companion tool
      Python
      •
      MIT License
      •1•0•0•0•Updated May 11, 2023May 11, 2023

    • MultiplexMS_documentation

      Public
      MultiplexMS GitHub documentation
      MIT License
      •0•0•0•0•Updated May 11, 2023May 11, 2023

    • lab_database_api

      Public
      RESTful API for lab database
      pythonapiflasksqlalchemyrestful-api
      Python
      •
      GNU General Public License v3.0
      •0•0•0•6•Updated Dec 8, 2022Dec 8, 2022

    • selenium_source

      Public
      The source code for selenium tests to be run on the deposition site.
      Python
      •0•0•0•0•Updated Jun 21, 2022Jun 21, 2022

    • isoanalyst

      Public
      IsoAnalyst - Analysis of biosynthetically linked stable isotope labeling experiments.
      Python
      •0•4•0•0•Updated Aug 27, 2021Aug 27, 2021

    • NPA-Named-Entity-Recognition-Scripts

      Public
      Repo for NER scripts for NPA Ingestion Database enrichment
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2021Aug 20, 2021

    • MS2Analyte_DataVisualization

      Public
      Data Visualization GUI for MS2Analyte
      Python
      •0•0•0•0•Updated Aug 3, 2021Aug 3, 2021

    • ms_codeutils

      Public
      A collection of scripts for Python driven MS
      Python
      •
      MIT License
      •0•2•0•0•Updated Apr 21, 2021Apr 21, 2021

    • green_tea_ms

      Public
      Scripts for mass spectrometry peak alignment for green tea metabolomics project
      Python
      •
      MIT License
      •1•2•0•0•Updated Mar 5, 2021Mar 5, 2021

    • html-parser

      Public
      html parser extracts html tables from Journal of Natural Products. Gathering NMR table types/number of compounds, parsing the rows/columns and separating multiple data types from a single cell.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • sample_git_project

      Public
      A simple sample git project
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 21, 2020Aug 21, 2020