Repositories list

• 2024-sep-mapqfilter

  Public
  C++

  •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

• 2025-cifi-insilico-titration-asm

  Public
  How much CiFi do we need to produce highly contiguous assembly?

  Python

  •0•0•0•0•Updated Sep 30, 2025Sep 30, 2025

• CiFi

  Public
  Pipeline for processing and analyzing CiFi data

  Shell

  •0•3•0•0•Updated Sep 3, 2025Sep 3, 2025

• HSD_brain_evolution

  Public
  R

  •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• 2025-khoe-san-novel

  Public
  HTML

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• hpc-notes

  Public
  0•0•0•0•Updated May 4, 2025May 4, 2025

• 2025-CHM13v2-SDs

  Public
  Another representation of the segmental duplications in CHM13v2.0 reference

  segmental-duplicationsparalogst2t+ 2segdupschm13

  HTML

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• Long_read_RNA_seq

  Public
  0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• GYPA

  Public
  Python

  •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

• public_data

  Public
  Repository for links to publicly available data from Dennis lab publications

  0•0•0•0•Updated Apr 4, 2024Apr 4, 2024

• t2t-variants

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Oct 24, 2021Oct 24, 2021

• snake-chipseq

  Public
  Workflow used in Shew et al. to call peaks in duplicated regions.

  Shell

  •0•0•0•0•Updated Sep 18, 2021Sep 18, 2021

• snake-fastcn

  Public
  Python

  •0•0•0•0•Updated Jun 23, 2021Jun 23, 2021