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@sinc-lab sinc(i) - Research institute for signals, systems and computational intelligence

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    23 repositories

    • RNAcomp2D

      Public
      Python
      •0•2•0•0•Updated Oct 9, 2025Oct 9, 2025

    • revisiting_xval_rnafolding

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • ET-Pfam

      Public
      Ensemble Transfer Learning for Protein Family Prediction
      Python
      •0•1•0•0•Updated Sep 15, 2025Sep 15, 2025

    • chewbite-sensors

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • rna-llm-folding

      Public
      Comprehensive benchmarking of Large Language Models for RNA secondary structure prediction," by L.I. Zablocki, L.A. Bugnon, M. Gerard, L. Di Persia, G. Stegmayer, D.H. Milone, Briefings in Bioinformatics, 2025
      Jupyter Notebook
      •2•10•2•0•Updated Apr 4, 2025Apr 4, 2025

    • sincFold

      Public
      A fast and accurate RNA secondary structure, end-to-end approach prediction method.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •7•10•0•0•Updated Jan 2, 2025Jan 2, 2025

    • chewbite-deep-fusion

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 28, 2024Dec 28, 2024

    • llm4pfam

      Public
      Jupyter Notebook
      •0•2•0•0•Updated May 8, 2024May 8, 2024

    • lncRNA-folding

      Public
      Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. Di Persia, D.H. Milone & G. Stegmayer, Briefings in Bioinformatics, 2022.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•19•0•0•Updated Mar 17, 2024Mar 17, 2024

    • biomonitoring_glyphosate_with_ML

      Public
      Analisis of glyphosate concentrations in women from SF (ARG) with Machine Learning
      Jupyter Notebook
      •0•0•0•0•Updated Dec 15, 2023Dec 15, 2023

    • gene-drug-relation-extraction

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 30, 2023Sep 30, 2023

    • chewbite-timeline

      Public
      Chewbite research group timeline
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 23, 2023Aug 23, 2023

    • miRe2e

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•14•0•0•Updated Jul 9, 2023Jul 9, 2023

    • phdseeker

      Public
      Pheromone Directed Seeker (PhDSeeker) is a tool based on a bio-inspired algorithm for the automatic synthesis of linear and branched feasible metabolic pathways.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 11, 2023May 11, 2023

    • transfer-learning-pfam

      Public
      Transfer learning: the key to functionally annotate the protein universe,” by L. A. Bugnon, E. Fenoy, A. Edera, J. Raad, G. Stegmayer and D.H. Milone. Patterns, Cell Press, 2023.
      Python
      •1•4•0•0•Updated Jan 30, 2023Jan 30, 2023

    • Comparison-of-Protein-learning

      Public
      Comparison of protein learning
      proteinsembeddingsproteingene-ontologyprotein-sequencesblastsequencegeneontologyprotein-sequenceprotein-domains
      Jupyter Notebook
      •2•4•0•0•Updated May 19, 2022May 19, 2022

    • exp2GO

      Public
      exp2GO is a novel method for the computational prediction of gene function annotations
      Jupyter Notebook
      •2•4•0•0•Updated Jan 27, 2022Jan 27, 2022

    • anc2vec

      Public
      Method for constructing embeddings of GO terms.
      Python
      •
      MIT License
      •9•14•0•0•Updated Nov 25, 2021Nov 25, 2021

    • clustermatch

      Public
      Clustermatch is an efficient clustering method for processing highly diverse data
      Python
      •
      MIT License
      •2•6•1•0•Updated Aug 30, 2021Aug 30, 2021

    • Recursos-de-Bioinformatica

      Public
      Una lista de recursos para Bioinformática con contenido en español y en inglés.
      Creative Commons Attribution 4.0 International
      •7•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • sarscov2-mirna-discovery

      Public
      This is the source code for the paper "Merino G., Raad J., Bugnon L.A., Yones C., Kamenetzky L., Claus J., Ariel F., Milone D.H. and Stegmayer G., Novel SARS-CoV-2 encoded small RNAs in the passage to humans, Bioinformatics, btaa1002, 2020
      MATLAB
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated May 10, 2021May 10, 2021

    • competencia_IC_2020

      Public
      Datasets para la competencia de Inteligencia Computacional, edición 2020
      0•0•0•0•Updated Nov 11, 2020Nov 11, 2020

    • dataset-jaw-movements

      Public
      Audio recordings dataset of grazing jaw movements in dairy cattle
      2•3•0•0•Updated May 5, 2020May 5, 2020