Repositories list

• diagram-converter

  Public
  Generates a set of JSON files to be consumed by the Diagram Viewer

  Java

  •3•1•0•1•Updated Dec 21, 2025Dec 21, 2025

• release-download-directory

  Public

  reactome/release-download-directory’s past year of commit activity
  Data-release-pipeline: Generation of files for the Reactome website download directory

  releasedata-release-pipelinemysql-release

  Java

  •1•0•10•1•Updated Dec 21, 2025Dec 21, 2025

• curator-tool-llm

  Public
  The project to leverage LLMs for Reactome curation

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 20, 2025Dec 20, 2025

• Website

  Public
  Contains the code and configuration for the website

  PHP

  •

  GNU General Public License v2.0

  •2•5•1•0•Updated Dec 20, 2025Dec 20, 2025

• wikidata-exporter

  Public
  Java

  •0•0•0•1•Updated Dec 19, 2025Dec 19, 2025

• release-update-stable-ids

  Public
  Data-release-pipeline: Updates stable identifiers of manually curated instances

  releasedata-release-pipelinemysql-release

  Java

  •0•0•1•3•Updated Dec 19, 2025Dec 19, 2025

• data-export

  Public

  reactome/data-export’s past year of commit activity
  Creates the files to be placed in the download section

  Java

  •2•2•2•2•Updated Dec 19, 2025Dec 19, 2025

• diagram-exporter

  Public
  Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)

  Java

  •3•1•2•3•Updated Dec 19, 2025Dec 19, 2025

• release-verifier-lib

  Public
  A library of common functions for verifying release steps have run successfully

  Java

  •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• sbml-exporter

  Public
  Java

  •1•0•0•0•Updated Dec 17, 2025Dec 17, 2025

• curator-tool-frontend

  Public
  TypeScript

  •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• interaction-exporter

  Public
  Exports molecular interactions inferred from Reactome content

  Java

  •1•5•0•0•Updated Dec 16, 2025Dec 16, 2025

• fireworks-layout

  Public
  Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

  visualisationpathwayspathways-overview+ 2reactome-pathwayradial-layout

  Java

  •3•1•1•0•Updated Dec 15, 2025Dec 15, 2025

• release-qa

  Public
  A collection of tools to perform QA checks during the Release process.

  Java

  •1•2•4•8•Updated Dec 15, 2025Dec 15, 2025

• graph-core

  Public
  Models the Reactome knowledgebase into a interconnected graph

  Java

  •8•19•2•3•Updated Dec 14, 2025Dec 14, 2025

• graph-importer

  Public
  Converts the Reactome knowledgebase into a interconnected graph

  Java

  •4•8•0•0•Updated Dec 13, 2025Dec 13, 2025

• PathwayBrowser

  Public
  TypeScript

  •0•0•19•0•Updated Dec 12, 2025Dec 12, 2025

• event-pdf

  Public
  Generates the Reactome book

  Java

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated Dec 12, 2025Dec 12, 2025

• analysis-service

  Public
  A RESTful API to access pathway analysis tools

  Java

  •3•4•1•2•Updated Dec 11, 2025Dec 11, 2025

• content-service

  Public
  The new Reactome REST API to access the data

  Java

  •5•11•1•2•Updated Dec 11, 2025Dec 11, 2025

• release-data-exporter

  Public
  Data-release-pipeline: Data exports for submission to NCBI, UCSC, and Europe PMC

  exporterreleaseneo4j-release+ 1data-release-pipeline

  Java

  •0•1•2•2•Updated Dec 11, 2025Dec 11, 2025

• data-content

  Public
  Java

  •2•1•0•0•Updated Dec 5, 2025Dec 5, 2025

• icon-validator

  Public
  Validate the structure and values of icon files

  Java

  •1•0•0•2•Updated Dec 5, 2025Dec 5, 2025

• Pathway-Exchange

  Public
  Pathway Exchange Code Repository

  Java

  •1•0•2•0•Updated Dec 4, 2025Dec 4, 2025

• release-gtp2chebi-update

  Public
  This project creates ChEBI cross-references in ReferenceTherapeutic instances by mapping from Guide to Pharmacology to ChEBI identifiers

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

• release-orthoinference

  Public
  Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species

  releasedata-release-pipelinemysql-release

  Java

  •0•0•0•3•Updated Dec 3, 2025Dec 3, 2025

• gsa-frontend

  Public
  TypeScript

  •

  Apache License 2.0

  •1•1•5•0•Updated Dec 3, 2025Dec 3, 2025

• gsa-backend

  Public
  Backend code of the Kubernetes based ReactomeGSA Analysis System

  Python

  •1•4•17•1•Updated Dec 3, 2025Dec 3, 2025

• release-jenkins-utils

  Public
  Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

  releasedata-release-pipeline

  Groovy

  •

  Apache License 2.0

  •0•0•5•0•Updated Dec 1, 2025Dec 1, 2025

• search-indexer

  Public
  Java

  •3•0•0•2•Updated Nov 28, 2025Nov 28, 2025