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    251 repositories

    • gen3-gitops

      Public
      ArgoCD manifests for gen3 deployments using helm charts.
      CSS
      •
      Apache License 2.0
      •3•6•0•152•Updated Feb 25, 2026Feb 25, 2026

    • gen3-workflow

      Public
      Gen3 service for GA4GH TES integration
      Python
      •
      Apache License 2.0
      •1•1•0•5•Updated Feb 24, 2026Feb 24, 2026

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •15•4•0•6•Updated Feb 24, 2026Feb 24, 2026

    • gen3-gitops-dev

      Public
      Apache License 2.0
      •0•1•0•2•Updated Feb 24, 2026Feb 24, 2026

    • indexclient

      Public
      Prototype index service client.
      Python
      •
      Apache License 2.0
      •3•4•0•11•Updated Feb 24, 2026Feb 24, 2026

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Go Template
      •
      Apache License 2.0
      •33•14•4•45•Updated Feb 24, 2026Feb 24, 2026

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •147•0•0•8•Updated Feb 24, 2026Feb 24, 2026

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •19•13•0•9•Updated Feb 24, 2026Feb 24, 2026

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •9•3•0•10•Updated Feb 24, 2026Feb 24, 2026

    • BMH-admin-portal

      Public
      Shared Codebase for the Biomedical Research Hub Initiative
      Python
      •
      Apache License 2.0
      •2•0•0•10•Updated Feb 24, 2026Feb 24, 2026

    • mmrf-data-commons

      Public
      Gen3.2 data commons nextjs app for MMRF
      TypeScript
      •
      Apache License 2.0
      •1•2•0•17•Updated Feb 24, 2026Feb 24, 2026

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•0•0•4•Updated Feb 24, 2026Feb 24, 2026

    • gen3-user-data-library

      Public
      Python
      •
      Apache License 2.0
      •1•1•0•12•Updated Feb 24, 2026Feb 24, 2026

    • workspace-token-service

      Public
      gen3
      Python
      •
      Apache License 2.0
      •2•4•0•3•Updated Feb 24, 2026Feb 24, 2026

    • tube

      Public
      ETL
      gen3
      Python
      •
      Apache License 2.0
      •9•9•1•2•Updated Feb 24, 2026Feb 24, 2026

    • ssjdispatcher

      Public
      SQS S3 Job Dispatcher
      Go
      •
      Apache License 2.0
      •5•3•0•4•Updated Feb 24, 2026Feb 24, 2026

    • sower-jobs

      Public
      Repos for storing all sower jobs
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Feb 24, 2026Feb 24, 2026

    • sower

      Public
      Job dispatcher for Kubernetes
      gen3
      Go
      •
      Apache License 2.0
      •3•4•0•4•Updated Feb 24, 2026Feb 24, 2026

    • requestor

      Public
      API to manage access requests
      gen3
      Python
      •
      Apache License 2.0
      •0•4•0•2•Updated Feb 24, 2026Feb 24, 2026

    • peregrine

      Public
      GraphQL search API service
      gen3
      Python
      •
      Apache License 2.0
      •9•13•0•6•Updated Feb 24, 2026Feb 24, 2026

    • pelican

      Public
      Sower jobs for PFB export & import
      gen3gen3-pfbgen3-sower-job
      Python
      •
      Apache License 2.0
      •4•3•0•6•Updated Feb 24, 2026Feb 24, 2026

    • metadata-service

      Public
      The Metadata Service provides API for retrieving JSON metadata of GUIDs.
      gen3
      Python
      •
      Apache License 2.0
      •13•19•1•8•Updated Feb 24, 2026Feb 24, 2026

    • manifestservice

      Public
      create and read manifests from s3
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Feb 24, 2026Feb 24, 2026

    • indexs3client

      Public
      Go
      •
      Apache License 2.0
      •4•0•0•2•Updated Feb 24, 2026Feb 24, 2026

    • indexd

      Public
      Index service server
      gen3
      Python
      •
      Apache License 2.0
      •21•26•24•15•Updated Feb 24, 2026Feb 24, 2026

    • hatchery

      Public
      hacktoberfestgen3
      Go
      •
      Apache License 2.0
      •4•7•0•5•Updated Feb 24, 2026Feb 24, 2026

    • guppy

      Public
      Server that supports GraphQL queries on data from Elasticsearch
      gen3
      JavaScript
      •
      Apache License 2.0
      •13•8•2•25•Updated Feb 24, 2026Feb 24, 2026

    • gen3-statics

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•4•Updated Feb 24, 2026Feb 24, 2026

    • gen3-spark

      Public
      gen3
      Dockerfile
      •
      Apache License 2.0
      •1•1•0•1•Updated Feb 24, 2026Feb 24, 2026

    • gen3-fuse

      Public
      an S3 file system built on jacobsa/fuse that uses the workspace-token-service
      gen3
      Go
      •
      Apache License 2.0
      •2•8•0•1•Updated Feb 24, 2026Feb 24, 2026