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scikit-bio Public
Forked from scikit-bio/scikit-bioscikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 27, 2026 -
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gdl Public
(Genome Download) Quickly download genome assemblies from NCBI
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downloads Public
💾 Happy file downloading for Python
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usearch12 Public
Forked from rcedgar/usearch12Open-source usearch
C++ GNU General Public License v3.0 UpdatedAug 5, 2025 -
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nixos-config Public
I'm doing the thing
Nix Creative Commons Zero v1.0 Universal UpdatedJul 29, 2025 -
finch-rs Public
Forked from onecodex/finch-rsA genomic minhashing implementation in Rust
Rust MIT License UpdatedJun 17, 2025 -
gbk-to-sqlite Public
Convert GenBank files to SQLite databases with an intuitive, queryable schema.
Python MIT License UpdatedJun 12, 2025 -
needletail Public
Forked from onecodex/needletailFast FASTX parsing and k-mer methods in Rust
Rust MIT License UpdatedApr 18, 2025 -
pages Public
Forked from sphinx-notes/pagesGithub Actions for publishing Sphinx HTML output to github pages
Python MIT License UpdatedApr 18, 2025 -
taxonomy Public
Forked from onecodex/taxonomyPython and Rust library for loading, saving, and manipulating taxonomic trees
Rust MIT License UpdatedApr 18, 2025 -
ncbi-taxonomy-bot Public
Bot that toots when NCBI updates their taxonomy database
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taxonomy-time-machine Public
Forked from onecodex/taxonomy-time-machineNCBI Taxonomy History Browser
Python MIT License UpdatedDec 12, 2024 -
snakemake-hello-world Public
(demo) Minimal working map-reduce pattern in Snakemake (with containerization)
Python UpdatedDec 5, 2024 -
rust-libgpod Public
Access iPod database using Rust
Rust GNU General Public License v2.0 UpdatedNov 1, 2024 -
mag Public
Forked from nf-core/magAssembly and binning of metagenomes
Nextflow MIT License UpdatedSep 30, 2024 -
nextflow-demo-barebones Public
Nextflow pipeline w/ modules sans nf-core
Nextflow UpdatedSep 27, 2024 -
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obsidian-periodic-notes Public
Forked from liamcain/obsidian-periodic-notesCreate/manage your daily, weekly, and monthly notes in Obsidian
TypeScript MIT License UpdatedAug 23, 2024 -
onecodex Public
Forked from onecodex/onecodexCommand line interface and Python client library for the One Codex API
Python MIT License UpdatedJun 18, 2024 -
homebrew-bio Public
Forked from brewsci/homebrew-bio🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Ruby Other UpdatedJun 17, 2024 -
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pb-metagenomics-tools Public
Forked from PacificBiosciences/pb-metagenomics-toolsTools and pipelines tailored to using PacBio HiFi Reads for metagenomics
HTML BSD 3-Clause Clear License UpdatedDec 13, 2023 -
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