RNA editing detection based on machine learning

User friendly and accurate binder design pipeline

Instructions for genetic variant detection from whole genome bisulfite sequencing (WGBS) data

R script used for make genomewide metaplot for Whole Genome Bisulfite Sequencing (WGBS) data

The EpiDiverse Whole Genome Bisulfite Sequencing Pipeline, implemented with Nextflow

A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data

A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

R package for DNA methylation analysis

Plotting package for bisulfite sequencing and methylation arrays

Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

A versatile aligning pipeline for bisulfite sequencing data

Tools for analyzing DNA methylation data

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data

LoRA for protein language models

ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model

Chai-1, SOTA model for biomolecular structure prediction

AptaNet as a Deep Learning approach for Aptamer-Protein Interaction Prediction

A web based tool to manage and automate the processing of publicly available datasets.

Quantification of transposable element expression using RNA-seq

Extensive de-novo TE Annotator

Annotation helper tool for the manual curation of transposable element consensus sequences

scDIOR: Single cell data IO softwaRe

Single-cell exploratory data analysis for RNA-Seq

scripts for RNA-Seq analysis

Single-cell analysis in Python. Scales to >100M cells.

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Dfam Transposable Element Tools Docker container.