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Starred repositories

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Python 35 5 Updated Feb 7, 2026

Examples of how to create colorful, annotated equations in Latex using Tikz.

TeX 3,894 215 Updated Jul 12, 2022

An I/O benchmark for deep Learning applications

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[Medical_NLP ➟ Awesome-AI4Med] medical-related LLMs, Multimodal systems, Datasets, Benchmarks, and more.

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🔍 Discover the Best in Custom GPT at OpenAI's GPT Store – Your Adventure Begins Here!

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Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.

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Jupyter Notebook 12,373 4,841 Updated Oct 28, 2025

Slurm: A Highly Scalable Workload Manager

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Unofficial set of LaTeX classes, styles, and knick-knacks aimed at use within the University of St Andrews.

TeX 25 2 Updated Nov 9, 2016

Framework to generate observational and interventional samples from structural equation models (SEMs)

Python 21 3 Updated Apr 14, 2025

Tools for plotting methylation data in various ways

Python 172 17 Updated Feb 12, 2026

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

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A list of Latex packages used to standardize good practices in the Northern Robotics Lab

TeX 6 Updated Mar 28, 2024

R package for fitting high-dimensional multivariate linear mixed effect models

HTML 37 15 Updated Oct 20, 2025

Custom simulation framework in Python for Event-Driven simulation of epidemics on networks. What makes this framework unique is its functionality for introducing interventions in the middle of epid…

Python 2 Updated Oct 7, 2022

ATLAS - Three commands to start analyzing your metagenome data

Python 402 98 Updated Nov 28, 2025

This template should get you started with writing a thesis and avoiding the most common errors

TeX 7 3 Updated Feb 26, 2022

A cookiecutter template for a beamer presentation

TeX 18 5 Updated Apr 16, 2020

All materials for the Networks practical of the 2019 Statistics for Omics course

HTML 2 3 Updated Jun 24, 2019

Papers from the computer science community to read and discuss.

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A faster lmm for GWAS. GPU support coming soon.

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Deep universal probabilistic programming with Python and PyTorch

Python 8,981 1,006 Updated Jul 9, 2025

a repo for reading lists related to research in the Stephens lab

R 2 1 Updated May 23, 2025

Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)

Python 14 6 Updated Feb 14, 2021

Simulations for Steinsaltz, Dahl and Wachter 2018 EJS

R 2 Updated Jan 2, 2020

Causal.jl - A modeling and simulation framework adopting causal modeling approach.

Julia 121 9 Updated Jan 29, 2022

Demonstrating best practices for bioinformatics command line tools

Shell 116 25 Updated Sep 25, 2020

Python package for the creation, manipulation, and learning of Causal DAGs

JavaScript 158 20 Updated Apr 12, 2023
Python 129 9 Updated Jun 2, 2023
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