Does metaquast detect whether blast.res files already exist for a given input? I underestimated the time it takes to generate the blast.res files, so for my ~100 assemblies it might take longer than the time allocated on my slurm queue (24 hrs). I wonder whether I should delete the job and start it again on a long queue right away (in the case that it is not possible to resume the job and I would not be able to reuse the blast.res files) or let it run and then resume reusing the (possibly incomplete) blast.res file set.
my command:
metaquast "${files[@]}" -o ${out_dir} -t $num_threads --min-identity 95 --min-alignment 160
Many thanks!