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Convert between measurements and z-scores/percentiles for INTERGROWTH-21st and WHO Child Growth Standards, and classify growth patterns.
Supporting code for uncultivated gut virus manuscript
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
A tool for identifying active prophage elements through read mapping
Code to accompany "Multitable Methods for Microbiome Data Integration"
Scripts for reproducing TEDDY virome/bacteriome analyses and figures
Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the branch 'example' or on the practical webpage:
Tutorial files for NORBIS summer school
Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whose parameters (the growth rate, the initial population size, …
Code used to generate the results of the rotabiome study
R package for pre-processing of mass and flow cytometry data
data, analysis scripts, and output figures for manuscript: Innate immune responses and gut microbiomes distinguish HIV exposed from unexposed children in a population-specific manner
A prospective longitudinal study of the vaginal microbiome in perimenarcheal girls
A set of R scripts for the analysis of microbial profiles
Supporting code for manuscript: Soil dsRNA Viromics
Ultra-deep search for novel viruses