Pipeline to pull microbial reads from WGS data and perform metagenomic analysis

A collection of useful .gitignore templates

All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

Online R learning for applied statistics

🔬 ♌ Bacterial ribosomal RNA predictor

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

R Code used in Banfora Paper

Python script to convert the metagenomic profile txt file to taxa level plots in python's bokeh and R's phyloseq

Similarity networks of biosynthetic gene clusters

genome collection and QC scripts for E coli project