Authors:
- Allison Shultz (Assistant Curator of Ornithology, Natural History Museum of Los Angeles County; [email protected])
- Tim Sackton (Director of Bioinformatics, Informatics Group, Harvard University; [email protected])
Code for analysis of public population genomic data from lots of species. This project has several components:
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fastq_to_vcf: FASTQ to VCF pipeline for reanalysis of SRA datasets
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vcf_qc: scripts and code to do quality checks on vcf output and appropriately filter results
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mk_tables: scripts and code to produce MK tables from filtered vcfs