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Fix a few typos #7

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14 changes: 7 additions & 7 deletions lectures/talk_20_07_10_JDEV.org
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Expand Up @@ -280,7 +280,7 @@ file:images/platform_diversity.png
:BEAMER_env: block
:END:
- GitHub, BitBucket, GitLab, ... make it more human-friendly
- Note that \textbf{none} of these platforms is _perenial_ (see
- Note that \textbf{none} of these platforms is _perennial_ (see
Roberto's presentation on \alert{S}oft\alert{W}are \alert{H}eritage)
- Git tracks a single software project: \hfill$\leadsto$ [[https://git-scm.com/book/fr/v2/Utilitaires-Git-Sous-modules][_Git submodule_]]
$\smiley$ or [[https://www.atlassian.com/git/tutorials/git-subtree][Git subtree]] $\Sey[1][cyan]$
Expand Down Expand Up @@ -326,7 +326,7 @@ file:images/platform_diversity.png
\vspace{-.3em}
- [[https://docs.conda.io/en/latest/][Anaconda]] is OS agnostic and popular for data science
- Reinstalling a basic environment even after a few months can
reveal impossible
turn out to be impossible
- Debian *commits* to reproducibility: [[https://snapshot.debian.org/][snapshots]] (March 2005) and
[[https://reproducible-builds.org/projects/][reproducible builds]]
- You may freeze a Dockerfile by wisely freezing sources
Expand All @@ -338,7 +338,7 @@ file:images/platform_diversity.png
:BEAMER_act: <2->
:END:
\vspace{-.3em}
- Allows to rebuild a software stack in a *controled* way\hfill (sources,
- Allows to rebuild a software stack in a *controlled* way\hfill (sources,
compiling options)
- Use *caches* to save compiling time
- [[https://guix.gnu.org/blog/2020/reproducible-computations-with-guix/][Time machine mechanism and export to docker/...]]
Expand All @@ -353,7 +353,7 @@ file:images/platform_diversity.png
[[https://twitter.com/GaelVaroquaux/status/1280850571201851392][The /REPL/ (Read–eval–print loop) vs. /Notebook/ vs /IDE/ debate]]

- In the beginning was the Mathematica (1988) and the Maple (1989)
notebooks, which allow to tell a story (*litterate programming*)\pause
notebooks, which allow to tell a story (*literate programming*)\pause

- Then IJulia, IPython, and IR merged into the [[https://jupyter.org/][Jupyter]] notebook $\Cooley[1][yellow]$
- The coolest kid on the block without +*IDE/Structure*+, \hfill
Expand Down Expand Up @@ -422,7 +422,7 @@ smtweb
+concurrent executions+ \vspace{-.5em}

[[https://pypet.readthedocs.io/en/latest/][PyPet]] extends Sumatra with Parameter Sweep (Fork-Join, store trajectories in HDF5)
** Tracking Data with [[https://www.datalad.org/][DataLad]] (an other NeuroScience project)
** Tracking Data with [[https://www.datalad.org/][DataLad]] (another NeuroScience project)
Builds on =git annex= and =git submodule= plus small =JSON= metadata \vspace{-1em}
#+begin_src shell :results output :exports both
datalad create myfirstrepo # datalad clone/update
Expand Down Expand Up @@ -535,9 +535,9 @@ file:images/deepkit-v2020.jpg
- Tracks key model metrics, hyperparams, visualizations, artifacts
and resources,
- Version control code and data
- Kunbernetes
- Kubernetes
- [[https://www.pachyderm.com/][Pachyderm]] (Version-controlled data science)
- Versionned data without +=git=+: [[https://docs.pachyderm.com/latest/concepts/data-concepts/repo/][a centralized location (no
- Versioned data without +=git=+: [[https://docs.pachyderm.com/latest/concepts/data-concepts/repo/][a centralized location (no
conflict, allows removal,...)]]
- Pipelines and distributed computer: Kubernetes/KubeFlow
- [[https://github.com/AITRICS/kono][Kono]]
Expand Down