The documentation can be found at readthedocs and can also be downloaded.
$ pip3 install -r build/requirements.txt$ pip3 install -r main/WEB/requirements.txt$ python3 /main/CLI/FindCritical.py [-h] [-v] -i <input file>
[-o <output file>]
[-swD <output file>] [-sF <output file>]
[-swDF <output file>]
optional arguments:
-h, --help show this help message and exit
-v, --verbose Print feedback while running.
-i <input file> Input metabolic model. Allowed file formats: .xml .json
.yml
-o <output file> Output spreadsheet file with results. Allowed file
formats: .xls .ods
-swD <output file> Save output model without Dead End Metabolites. Allowed
file formats: .xml .json .yml
-sF <output file> Save output model with reactions bounds updated with
Flux Variability Analysis. Allowed file formats: .xml
.json .yml
-swDF <output file> Save output model with reactions bounds updated with
Flux Variability Analysis and without Dead End
Metabolites. Allowed file formats: .xml .json .yml$ python3 main/GUI/run_GUI.py
$ sudo service redis-server start
# Change secret-key in 'main/WEB/DjangoProject/settings.py'
$ python3 manage.py runserver
Go to http://127.0.0.1:8000/app/
Feel free to dive in! Open an issue or submit PRs.
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MIT © Alex Oarga