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1. EM-mosaic-pipeline EM-mosaic-pipeline Public

   Mosaic detection pipeline workflow

   R

2. ShenLab/mosaicism ShenLab/mosaicism Public

   R 1 1

3. annotate_and_filter annotate_and_filter Public

   Annotate and filter de novo variants

   WDL

4. apply_filters apply_filters Public

   Apply a set of filters to the annotated de novo callset generated by annotate_variants

   WDL

5. gvcf_to_denovo gvcf_to_denovo Public

   Call de novo variants on a per-sample basis from proband, father, mother gvcfs

   Python

6. filtered_denovos_to_mosaic filtered_denovos_to_mosaic Public

   Detect mosaic variants from filtered de novo variant callset (sample set)

   R