Search results

Can I do fgsea analysis on single cell ?

Status: Open.

#177 In alserglab/fgsea;

· Xiangyi-Deng opened on Oct 24, 2025

fgsea hangs forever for highly enriched pathways in the presence of repeated high scored genes

Status: Open.

#151 In alserglab/fgsea;

· guidohooiveld opened on Apr 4, 2024

Gene filtering for FGSEA

Status: Open.

#143 In alserglab/fgsea;

· SirKuikka opened on Nov 15, 2023

Obtain per-sample expression value for a gene set

Status: Open.

#137 In alserglab/fgsea;

· PatrickMaclean opened on Jul 12, 2023

Question: Understanding discrepant results when using different ranking approaches and algorithmic parameters

question

Status: Open.

#128 In alserglab/fgsea;

· atakanekiz opened on Feb 11, 2023

Question: Visium Data and pulling out cells with high GO enrichment for a given pathway

question

Status: Open.

#127 In alserglab/fgsea;

· DirtyHarry80 opened on Nov 20, 2022

Use outside of R

Status: Open.

#121 In alserglab/fgsea;

· maxkfranz opened on Oct 19, 2022

Citation

Status: Open.

#116 In alserglab/fgsea;

· pstew opened on Jul 21, 2022

fgsea hangs with nperm=1001, but not 1000

invalid

Status: Open.

#93 In alserglab/fgsea;

· assaron opened on May 11, 2021

Suggestion: multi-thread collapsePathways

Status: Open.

#84 In alserglab/fgsea;

· Horokhovskyi opened on Nov 2, 2020

plotEnrichment ranks labels

Status: Open.

#58 In alserglab/fgsea;

· igordot opened on Dec 7, 2019

scRNA-seq: how to create the Ranked list?

question

Status: Open.

#50 In alserglab/fgsea;

· asmariyaz23 opened on Jul 24, 2019