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Commits on Dec 2, 2025

• utils_nfcore_pipeline: fix small lang server error (#9492)

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Commits on Sep 29, 2025

• vep: fix recipe build (#9153)

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Commits on Sep 26, 2025

• Add module ngsbits updhunter (#9146)

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Commits on Sep 25, 2025

• bump ensemblvep (again) (#9134)

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Commits on Sep 24, 2025

• bump snpeff, snpsift (#9116)

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• add strobealign to fastq_align_dna (#9125)

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Commits on Sep 23, 2025

• bump snapaligner (#9123)

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• Bump/bwa (#9122)

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• bump bwamem2 to v2.3 (#9124)

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• bump mosdepth (#9121)

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• fix version channels in bcl_demultiplex subwf (#9120)

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• Bump bcl-convert to v4.4.6 (#9119)

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Commits on Sep 18, 2025

• drop empty dir (#9095)

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• bump gatk4 (#9033)

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Commits on Sep 17, 2025

• Bump `manta` build (#9084)

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Commits on Sep 16, 2025

• new module: strobealign (#9076)

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• bump vep to 115.1 (#9072)

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Commits on Sep 15, 2025

• bump picard (#9031)

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• Bulk update `bcftools` (#9039)

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Commits on Sep 11, 2025

• bulk bump samtools modules (#9025)

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Commits on Sep 4, 2025

• Bump/ensembl vep (#8995)

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Commits on Aug 13, 2025

• bump mqc build version (#8896)

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Commits on Jul 10, 2025

• bump MQC to 1.30 (#8766)

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Commits on Jul 2, 2025

• Bump nf-schema in subwf test (#8742)

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Commits on Jun 3, 2025

• bump bcl-convert (#8584)

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Commits on Mar 27, 2025

• Bump bwa dependencies (#8044)

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  mashehu

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• bump bowtie/bowtie2 and dependencies (#8006)

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Commits on Feb 6, 2025

• enable cram output for samtools_sormadup (#7436)

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Commits on Dec 13, 2024

• fix vcf2db: add missing dependencies (#7217)

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Commits on Nov 21, 2024

• Fix language server errors (#7026)

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Commits on Nov 19, 2024

• bump ALL gatk4 modules (#6917)

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• migrate vcf2db to wave (#7022)

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Commits on Sep 18, 2024

• bump samtools (#6648)

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  sateeshperi

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Commits on Sep 10, 2024

• add pairhmm threads to haplotypecaller (#6620)

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Commits on Aug 30, 2024

• Bump/wisecondorx (#6464)

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