🧬 Pathway & PPI Analysis App

Analyze gene lists for pathway enrichment and protein-protein interactions (PPI) with a powerful Streamlit-based bioinformatics tool.

🖼️ Screenshots

This interactive app allows researchers and bioinformaticians to:

Upload gene lists (.csv or .xlsx)
Run Pathway Enrichment via STRING-DB API (Reactome, KEGG, WikiPathways, etc.)
Perform Protein-Protein Interaction (PPI) network analysis with degree sorting
Visualize top networks interactively using pyvis
Download combined results in Excel format

🎯 Single or Combined Analysis: Choose from Pathway, PPI, or Combined.
📊 Real-time Visualization: Preview enriched terms and hub genes.
🔍 Interactive Graphs: Explore top 20 nodes using force-directed layouts.
💾 One-click Downloads: Export to Excel with separate sheets for each analysis.

git clone https://github.com/shari01/Pathway-PPI-Analysis-Tool.git
cd Pathway-PPI-Analysis-Tool
pip install -r requirements.txt
streamlit run app.py

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
README.md		README.md
combined_results (1).xlsx		combined_results (1).xlsx
main.py		main.py
pathway_enrichment (1).xlsx		pathway_enrichment (1).xlsx
ppi_analysis.xlsx		ppi_analysis.xlsx
requirements.txt		requirements.txt