This BMS Spatial Portal Shiny application offers users rich visualization for associated publication Visium datasets using custom-curated Seurat v3 objects as input.

Source code is available from GitHub and is released under the GPL v3 license (see LICENSE.md).

Lyubetskaya A, Rabe B, Fisher A, Lewin A, Neuhaus I, Brett C, Brett T, Pereira E, Golhar G, Kebede S, Font-Tello A, Mosure L, Van Wittenberghe N, Mavrakis K, MacIsaac K, Chen B, Drokhlyansky E (2022). “Assessment of Spatial Genomics for Oncology Discovery”. Cell Reports Methods. doi: TBA

• R: 4.3.3
• Shiny >= 1.7.0
• canvasXpress 1.50.5