bhattlab
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kraken2_classification
kraken2_classification PublicSnakemake workflow for metagenomic classification with Kraken2
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bhattlab_workflows
bhattlab_workflows PublicComputational workflows for metagenomics tasks, by the Bhatt lab
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SmORFinder
SmORFinder PublicA command line tool to identify and annotate small proteins in microbial sequencing datasets.
Repositories
- phanta Public
Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
bhattlab/phanta’s past year of commit activity - bhattlab_workflows_nf Public
Computational workflows for metagenomics tasks, packaged with Nextflow and Singularity.
bhattlab/bhattlab_workflows_nf’s past year of commit activity - AWIGen2Microbiome Public
Repository for the AWI-Gen 2 microbiome project workflows, analysis, and results.
bhattlab/AWIGen2Microbiome’s past year of commit activity - GenomeSearch Public
Quickly search for closely related microbial genomes using a marker-gene based approach.
bhattlab/GenomeSearch’s past year of commit activity - MGEfinder Public
A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
bhattlab/MGEfinder’s past year of commit activity - SmORFinder Public
A command line tool to identify and annotate small proteins in microbial sequencing datasets.
bhattlab/SmORFinder’s past year of commit activity
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