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19 results for source starred repositories
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Jupyter Notebooks for Mastering LLM with Advanced RAG Course

Jupyter Notebook 285 115 Updated Jan 3, 2025

This repository contains various advanced techniques for Retrieval-Augmented Generation (RAG) systems.

Jupyter Notebook 2,365 299 Updated Feb 17, 2025

This repository showcases various advanced techniques for Retrieval-Augmented Generation (RAG) systems. RAG systems combine information retrieval with generative models to provide accurate and cont…

Jupyter Notebook 23,780 2,741 Updated Dec 11, 2025

This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publication in Nature Machine Intelligence (Soenksen LR, Ma Y, Zeng …

Python 139 30 Updated Aug 30, 2025

Multi-modal single cell analysis pipelines

Python 62 14 Updated Dec 11, 2025

Tutorials for learning scverse

Python 18 15 Updated Dec 22, 2025

Writing reviews of academic papers

510 106 Updated Aug 12, 2015

A python port of the R package SCTransform:

Jupyter Notebook 21 5 Updated Jul 10, 2021

A curated and summarized list of bioinformatics bench-marking papers and resources.

350 64 Updated Nov 6, 2025
R 46 11 Updated May 17, 2022

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

JavaScript 241 47 Updated Aug 18, 2025

How to get started with the single cell batches comparison

5 Updated Sep 18, 2017

Markdown Cheatsheet for Github Readme.md

5,194 6,372 Updated Aug 31, 2025

Simple simulation of single-cell RNA sequencing data

R 232 60 Updated Dec 15, 2025

Table of software for the analysis of single-cell RNA-seq data.

R 335 83 Updated Dec 27, 2025

Vignette for Single-Cell workshop at Festival of Genomics California 2016

HTML 3 3 Updated Jul 10, 2017

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

433 64 Updated Dec 17, 2025