Stars
A pipeline for annotating genomic contigs from the Ig loci
quickly filter fastq files by matching sequences to a set of regex patterns
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
LLM-powered multiagent persona simulation for imagination enhancement and business insights.
AIRRSHIP simulates B cell receptor (BCR) sequences for use in benchmarking applications where BCR sequences of known origin are required.
Gradient descent is cool and all, but what if we could delete it?
LLocalSearch is a completely locally running search aggregator using LLM Agents. The user can ask a question and the system will use a chain of LLMs to find the answer. The user can see the progres…
Perplexity Inspired Answer Engine
Modern React starter kit with Bun, TypeScript, Tailwind CSS, tRPC, and Cloudflare Workers. Production-ready monorepo for building fast web apps.
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Machine Learning Engineering Open Book
baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).
Fine-tune mistral-7B on 3090s, a100s, h100s
Rendering protein mutation movies from predicted 3D structures
Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Code and data used in The Great Repertoire Project
Manuscript describing summary statistics for repertoires
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
[Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.