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dotfiles Public
Settings and configurations for a command line environment that feels like home.
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volt Public
Extensible static site generator
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crimson Public
Bioinformatics tool outputs converter to JSON or YAML
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poetry2nix Public
Forked from nix-community/poetry2nixConvert poetry projects to nix automagically [maintainer=@adisbladis,@cpcloud]
Nix MIT License UpdatedOct 27, 2024 -
biopython Public
Forked from biopython/biopythonPython library for biological data processing
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wf Public archive
Wait for TCP servers to be ready
Go BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2022 -
pytest-pipeline Public archive
Pytest plugin for functional testing of data analysis pipelines
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poc_biopy Public archive
Proof of concept of an alternative Biopython distribution
Python UpdatedOct 26, 2022 -
biostuff Public archive
Collection of scripts for working with various bio-related data
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cookiecutter-scala Public archive
Opinionated cookiecutter template for a Scala project
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cookiecutter-snakemake-wrapper Public archive
Cookiecutter template for writing Snakemake wrappers
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2022 -
rattle Public archive
Opinionated utilities for Snakemake pipelines.
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2022 -
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gtetools Public archive
Command line tools for working with various gene annotation formats.
Rust BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2022 -
singularity-vim Public archive
Vim syntax files for Singularity recipe files
Vim Script BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2022 -
python-markdown2 Public
Forked from trentm/python-markdown2markdown2: A fast and complete implementation of Markdown in Python
Python Other UpdatedOct 6, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJul 25, 2018 -
cookiecutter-ansible-vagrant Public archive
Cookiecutter template for deployment repos using Ansible and Vagrant
Ruby BSD 3-Clause "New" or "Revised" License UpdatedMay 21, 2018 -
fsnviz Public
Tool for plotting gene fusion events using Circos.
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virtual-clusters Public archive
Recipes for setting up a local virtual cluster using specific scheduling engines.
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docker_ubuntu_drmaa_conda Public archive
Forked from jakirkham/docker_ubuntu_drmaa_condaFor building a docker image on Ubuntu with Grid Engine, DRMAA, and miniconda installed.
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rust-bio Public
Forked from rust-bio/rust-bioThis library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Rust MIT License UpdatedJun 12, 2017 -
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align Public archive
Forked from brentp/alignsequence alignment. global, local, glocal.
Python UpdatedDec 21, 2016 -
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abifpy Public archive
Module for reading ABI Sanger sequencing trace files
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