Name	Name	Last commit message	Last commit date
Latest commit History 1 Commit
cog	cog
kog	kog
GATK_get_filtering_thresholds.pl	GATK_get_filtering_thresholds.pl
Pacbio_extract_longest_reads.pl	Pacbio_extract_longest_reads.pl
ParaFly	ParaFly
README.md	README.md
RNA_Seq_Sam_Statistics.pl	RNA_Seq_Sam_Statistics.pl
VCF_InDel_primer3.pl	VCF_InDel_primer3.pl
add_geneModels_to_spliceGrapher_GTF.pl	add_geneModels_to_spliceGrapher_GTF.pl
alternative_splicing_count.pl	alternative_splicing_count.pl
alternative_splicing_statisctis.pl	alternative_splicing_statisctis.pl
alternative_splicing_statisctis_A53SS.pl	alternative_splicing_statisctis_A53SS.pl
alternative_splicing_statisctis_AFLE.pl	alternative_splicing_statisctis_AFLE.pl
alternative_splicing_statisctis_ES.pl	alternative_splicing_statisctis_ES.pl
alternative_splicing_statisctis_IR.pl	alternative_splicing_statisctis_IR.pl
annot_GOs_to_GAF2.pl	annot_GOs_to_GAF2.pl
augustus_gff3_to_evm_gff3.pl	augustus_gff3_to_evm_gff3.pl
augustus_para.pl	augustus_para.pl
augustus_para_with_hints.pl	augustus_para_with_hints.pl
bam2wig	bam2wig
bestGeneModels.pl	bestGeneModels.pl
bestProtein.pl	bestProtein.pl
best_hsp	best_hsp
blast.pl	blast.pl
blastOut6_filter.pl	blastOut6_filter.pl
blast_annotation	blast_annotation
blast_hits	blast_hits
blast_hsp	blast_hsp
bwrpsb.pl	bwrpsb.pl
cafe	cafe
cal_seq_length.pl	cal_seq_length.pl
chlorop	chlorop
circos_create_gc_histogram.pl	circos_create_gc_histogram.pl
circos_create_karyotype_band_by_MCScanX.pl	circos_create_karyotype_band_by_MCScanX.pl
circos_create_karyotype_by_genome.pl	circos_create_karyotype_by_genome.pl
cog_R.pl	cog_R.pl
cog_from_xml.pl	cog_from_xml.pl
count_emapper_kog.pl	count_emapper_kog.pl
create_featureTable_prokaryote.pl	create_featureTable_prokaryote.pl
diff2file.pl	diff2file.pl
edena	edena
emapper-ann	emapper-ann
emapper-eggnog	emapper-eggnog
enrichment_4num.pl	enrichment_4num.pl
eukaryotic_gene_model_statistics.pl	eukaryotic_gene_model_statistics.pl
evm_genes_filtering.pl	evm_genes_filtering.pl
extract_longest_isoforms_from_TrinityFasta.pl	extract_longest_isoforms_from_TrinityFasta.pl
extract_most_abundant_isoforms_from_TrinityFasta.pl	extract_most_abundant_isoforms_from_TrinityFasta.pl
extract_trinity_unigene_by_isofroms_expression.pl	extract_trinity_unigene_by_isofroms_expression.pl
fasta2agp.pl	fasta2agp.pl
fasta2cddAnotation.pl	fasta2cddAnotation.pl
fasta_no_blank.pl	fasta_no_blank.pl
fastas2aligned_by_mafft.pl	fastas2aligned_by_mafft.pl
fastqQualityFormat2phred33.pl	fastqQualityFormat2phred33.pl
fastqStatsAndSubsample	fastqStatsAndSubsample
fastq_rc.pl	fastq_rc.pl
gbrowse2_create_genome_scaffold_gff3.pl	gbrowse2_create_genome_scaffold_gff3.pl
geneMarkS_fasta_header_modifier.pl	geneMarkS_fasta_header_modifier.pl
geneMarkS_gff2gff3.pl	geneMarkS_gff2gff3.pl
genePredToBed	genePredToBed
geneid	geneid
genome_seq_clear.pl	genome_seq_clear.pl
genome_statistic.pl	genome_statistic.pl
get_KOG_from_emapper.pl	get_KOG_from_emapper.pl
gff3ToGtf.pl	gff3ToGtf.pl
gff3_clear.pl	gff3_clear.pl
ghostz	ghostz
gtf2gff3.pl	gtf2gff3.pl
gtfToGenePred	gtfToGenePred
hints2genemarkETintron.pl	hints2genemarkETintron.pl
hisat2_extract_snps_VCF.pl	hisat2_extract_snps_VCF.pl
htseq_outs2matrix.pl	htseq_outs2matrix.pl
interProScan5.pl	interProScan5.pl
iprscan5_lwp.pl	iprscan5_lwp.pl
iprscan_renaming_xmls.pl	iprscan_renaming_xmls.pl
kaas2pathwayEnrichmentAnalysis.pl	kaas2pathwayEnrichmentAnalysis.pl
kill_procedures_by_name_clf.pl	kill_procedures_by_name_clf.pl
kog_R.pl	kog_R.pl
kog_from_xml.pl	kog_from_xml.pl
lastz	lastz
lastz_D	lastz_D
locus_of_NNN_in_genome.pl	locus_of_NNN_in_genome.pl
maker_gff3_out_sort_rename.pl	maker_gff3_out_sort_rename.pl
maskedByGff.pl	maskedByGff.pl
matrix_constructed_from_cuffnorm.pl	matrix_constructed_from_cuffnorm.pl
matrix_correlation_cal.pl	matrix_correlation_cal.pl
mcscanx_stats_blocks.pl	mcscanx_stats_blocks.pl
merge_eggNOG_to_ko.pl	merge_eggNOG_to_ko.pl
merge_interpro_to_go.pl	merge_interpro_to_go.pl
merge_repeatMasker_out.pl	merge_repeatMasker_out.pl
meta_platanus	meta_platanus
minimap2	minimap2
ncbiRemoteBlast.pl	ncbiRemoteBlast.pl
ncbi_acc_or_gi_to_fasta.pl	ncbi_acc_or_gi_to_fasta.pl
orthoMCL2cafe.pl	orthoMCL2cafe.pl
orthoMCL2cafe2.pl	orthoMCL2cafe2.pl
orthomcl_findSingleCopyOrtholog.pl	orthomcl_findSingleCopyOrtholog.pl
orthomcl_genes_number_stats.pl	orthomcl_genes_number_stats.pl
para_alternative_splicing_statisctis.pl	para_alternative_splicing_statisctis.pl
para_hmmscan.pl	para_hmmscan.pl

Name

Last commit message

Last commit date

1 Commit

cog

kog

GATK_get_filtering_thresholds.pl

Pacbio_extract_longest_reads.pl

ParaFly

README.md

RNA_Seq_Sam_Statistics.pl

VCF_InDel_primer3.pl