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cEvo Public Resources

Public resources for our projects.

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  1. Quantification-of-the-spread-of-a-SARS-CoV-2-variant Quantification-of-the-spread-of-a-SARS-CoV-2-variant Public

    Python 10

  2. 2015-CeskyKrumlov-Phylodynamics 2015-CeskyKrumlov-Phylodynamics Public

    Český Krumlov 2015 - Phylodynamics

    R 2 2

  3. TreePrior-ClockRate TreePrior-ClockRate Public

    Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)

    R 2 3

  4. POUMM-GWAS POUMM-GWAS Public

    Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".

    TeX 2 1

  5. TreePar-MatlabPlugin TreePar-MatlabPlugin Public

    Matlab plugin for TreePar to calculate likelihood for age dependent extinction rates

    M 1

  6. Ebola-CurrentsOutbreaks2014 Ebola-CurrentsOutbreaks2014 Public

    Additional files for our paper "Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data" submitted to PLOS Currents Outbreaks in September 2014.

    R

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