Update goreleaser yml to remove deprecated property (#55)

* update goreleaser yml

* Update .gitignore

add part size tuning logic (#48)

Make primer-bed optional for CG uploads (#46)

* Remove check for primer bed in consensus genome cmd

* Remove help references to primer-bed requirement

* Lint

* Fix consensusGenome test for "missing" primer bed

* Add clarifying comment to test

* Fix test error handling

* Remove test predicated on error thrown when primer-bed is required

Fix file_type assignment for input_files (#44)

* Add file_type param to createSamplesReqInputFile

* create type FileType string with string constants
* assign file type based on sampleOptions

* define FileType in createSamplesReqInputFile as string

* Cast FileType as string when building createSamplesReqInputFile struct

* Add comment noting the FileType constant must be synced with CZID InputFile model constants

* default to FASTQ filetype, change if options present

* Rename ReferenceAccessionFileType to ReferenceSequenceFileType

* Store filename and type together in struct when accessed from sampleFiles

Add file_type parameter to input_files (#43)

* Add file_type param to createSamplesReqInputFile

* create type FileType string with string constants
* assign file type based on sampleOptions

* define FileType in createSamplesReqInputFile as string

* Cast FileType as string when building createSamplesReqInputFile struct

* Add comment noting the FileType constant must be synced with CZID InputFile model constants

* default to FASTQ filetype, change if options present

* Rename ReferenceAccessionFileType to ReferenceSequenceFileType

capture one more case of falling back to raw collection location

fall back to plain text locations if no location suggestion is found (#…

…40)

add long-read-mngs to the CLI (#39)

fix bug that breaks consensus genomes without a primer bed (#38)

add better command line arg docs and checks (#37)