Workflow to calculate partial atomic charges for structures in PDB database

Protein Ligand INteraction Dataset and Evaluation Resource

Working with molecular structures in pandas DataFrames

Package management made easy

Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.

Fully open reproduction of DeepSeek-R1

Workflow to clean up and fix structural problems in protein-ligand binding datasets

Chai-1, SOTA model for biomolecular structure prediction

The fastest way to create an HTML app

Fabric is an open-source framework for augmenting humans using AI. It provides a modular system for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.

An easy-to-use Supabase connector for Streamlit that caches your API calls to make querying fast and cheap.

Python bindings for llama.cpp

The uncompromising Python code formatter

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Interact with your documents using the power of GPT, 100% privately, no data leaks

Meditron is a suite of open-source medical Large Language Models (LLMs).

Python programs, usually short, of considerable difficulty, to perfect particular skills.

"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files

GPU & Accelerator process monitoring for AMD, Apple, Huawei, Intel, NVIDIA and Qualcomm

Python logging made (stupidly) simple

Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet …

Tensors, for human consumption

Master the command line, in one page

The ultimate Vim configuration (vimrc)

Github Pages template based upon HTML and Markdown for personal, portfolio-based websites.

AI Toolkit for Healthcare Imaging

A simple, yet elegant, HTTP library.

Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2023