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   Time-stamp: <Wed 2015-06-10 10:30 svarrette>

  Copyright (c) 2013-2015 UL HPC Team aka. S. Varrette, H. Cartiaux, V. Plugaru, S. Diehl <[email protected]>

| Project Page | Documentation | Issues |

This repository holds a set of tutorials to help the users of the UL HPC platform to better understand or simply use our platform.

For each subject, you will have a dedicated directory organized as follows:

• README.md: hold the description of the tutorial

• (eventually) Makefile: a GNU make configuration file, consistent with the following conventions for the lazy users who do not wish to do all the steps proposed in the tutorial:

  • make fetch will retrieve whatever archives / sources are required to perform the tutorial
  • make build will automate the build of the software
  • make run_interactive to perform a sample run in interactive mode
  • make run to perform a sample run in passive mode (i.e via oarsub -S ... typically)
  • (eventually) make plot to draw a plot illustrating the results obtained through the run.

The organization and indexing of the tutorials follows the program of the last UL HPC School and thus is subject to changes over time.

Basic tutorials:

• PS1B: Getting Started on the UL HPC platform (SSH, data transfer, OAR, modules, monitoring)
• PS2A: HPC workflow with sequential jobs

MPI

• PS3A-1: running the OSU Micro-Benchmarks
• PS3A-2: running HPL

Mathematics:

• PS3B: running MATLAB
• PS3C: running R

Advanced Software Management

• PS 4A: Software environment generation: RESIF/Easybuild

Bio-informatic

• PS 6A: Running Bio-informatics software: test cases on Abyss, GROMACS, Bowtie2/TopHat, mpiBLAST

Parallel Debuggers

• Direct, Reverse and parallel Memory debugging with TotalView
• Allinea

You can submit bug / issues / feature request using the ULHPC/tutorials Tracker.

If you want to contribute to the code, you shall be aware of the way this module is organized. These elements are detailed on docs/contributing.md.

You are more than welcome to contribute to its development by sending a pull request.

Read the Docs aka RTFD hosts documentation for the open source community and the ULHPC/sysadmins has its documentation (see the docs/ directly) hosted on readthedocs.

See docs/rtfd.md for more details.

This project and the sources proposed within this repository are released under the terms of the GPL-3.0 licence.