- Bend, OR/Seattle, WA, USA
Highlights
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Looking at algorithms for effectively and correctly infecting a population with heterogeneous acquisition risk.
Jupyter Notebook MIT License UpdatedOct 3, 2025 -
laser-vector-genetics Public
LASER based model of malaria (SEIR) and vector genetics (gene drive)
MIT License UpdatedJul 8, 2025 -
laser Public
Forked from jonathanhhb/laserLight Agent Spatial modeling for ERadication
Python MIT License UpdatedJul 3, 2025 -
capacity-calculation Public
How to determine needed capacity given initial population and CBR.
Jupyter Notebook UpdatedJun 5, 2025 -
lasik-multiproc Public
Experiments in running LASIK model on multi-cpu machine
Python UpdatedMay 29, 2025 -
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python-dll Public
Example of dynamic discovery, loading, and execution of Python code.
Python UpdatedApr 1, 2025 -
msft-data-science-codespace Public
empty repository for playing with codespace selection and configuration
Jupyter Notebook MIT License UpdatedFeb 22, 2025 -
AdventOfCode Public
Solutions for Advent of Code
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cookiecutter-pylibrary Public
Forked from ionelmc/cookiecutter-pylibraryEnhanced cookiecutter template for Python libraries.
Python BSD 2-Clause "Simplified" License UpdatedOct 18, 2024 -
spatial-numpy-cohort-demo Public
Forked from edwenger/spatial-numpy-cohort-demoDemo of fixed-generation spatial transmission model using numpy cohorts
Python UpdatedSep 7, 2024 -
Kolmogorov-Smirnov Public
Exploring the K-S test in order to implement validation testing for LASER
Dockerfile MIT License UpdatedAug 19, 2024 -
ocn-generation Public
Explore using the OCNet R package to generate synthetic river networks.
MIT License UpdatedAug 7, 2024 -
kaplan-meier-to-distribution Public
Given a Kaplan-Meier survival curve, draw for time of death given survival to date.
Jupyter Notebook MIT License UpdatedJul 25, 2024 -
cupy-exploration Public
Testing cuDF - make that cupy - for disease modeling.
Jupyter Notebook MIT License UpdatedJul 16, 2024 -
func-shape-match Public
Can we calculate x-axis and y-axis offset for similar functions?
Python MIT License UpdatedJun 24, 2024 -
population-initialization Public
Put together the population pyramid sampling for age with Kaplan-Meier curve sampling for date of death with a heap-based priority queue implementation to line all the agents up in date of death or…
Python MIT License UpdatedJun 10, 2024 -
draw-from-pyramid Public
Draw ages for existing population from a population pyramid
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exposure-skipping Public
Notebook to explore "exposure skipping" algorithm
Jupyter Notebook MIT License UpdatedMar 29, 2024 -
github-copilot-fundamentals-200 Public template
Forked from thony-p/github-copilot-fundamentals-200Python UpdatedMar 20, 2024 -
GitHub-Copilot-Fundamentals-100 Public template
Forked from thony-p/GitHub-Copilot-Fundamentals-100Python UpdatedMar 18, 2024 -
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npyfiles Public
Forked from eddelbuettel/rcppcnpyRcpp bindings for NumPy files
C++ GNU General Public License v2.0 UpdatedFeb 8, 2024 -
laser-technology-comparison Public
Forked from krosenfeld-IDM/laser-technology-comparisonCompare performance of different options for light agent spatial modeling
Python UpdatedFeb 7, 2024 -
laser-taichi Public
Light Agent Spatial modeling for ERadication with Python and Taichi
Python UpdatedJan 19, 2024 -
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covasim Public
Forked from InstituteforDiseaseModeling/covasimCOVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
Python MIT License UpdatedDec 30, 2023