Stars
Bioinformatic pipeline for processing 16S rRNA amplicon data with exact Amplicon Sequence Variants (ASV's)
Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements.
Efficient phylogenetic tree inference for massive taxonomic datasets
A pipeline for bioinformatics analysis of bacterial genomes
Aligns short reads using dynamic seed size with strobemers
Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.
A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Algorithms for Routing and Solving the Traffic Assignment Problem
R package for distilling functional annotations of bacterial genomes and metagenomes
Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public datab…
Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
An updated pipeline for pangenome investigation
Access a database of word frequencies, in various natural languages.
Foldseek enables fast and sensitive comparisons of large structure sets.