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Merged
cnobles merged 26 commits into from
Feb 19, 2019
Merged

Update v0.9.5 #31

cnobles merged 26 commits into from
Feb 19, 2019

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@cnobles cnobles commented Feb 19, 2019

v0.9.5 (February 19th, 2019)

  • Updated demultiplexing to be more efficient and better HPC compatible.
  • Added RefSeq Extended* reference gene sets
    • 'ext' includes curated, predicted, and other RefSeq sets
    • 'ext.nomodel' includes only curated and other RefSeq sets
  • Incorporated resource allocation for job dependent memory consumption
    • Works great with HPC to specify memory requirements
  • Streamlined input for report generation by only requiring config(s)

Christopher Nobles added 26 commits January 31, 2019 23:33
Digest test and updated build to v0.9.3.
b80f568
Update to testing and include digest yml.
60f0e21
Bugfix.
65eff41
Updates to install.sh to fix occational bug, and formating for comman…
4589230 
…d.py
Install.sh bugfix.
638b23f
Updtate version to v0.9.5
92a0eec
Update to demultiplexing script.
6b12a8c
Updated demultiplexing and rules. Added maxNcount param.
b45e91a
Updated gene references and documentation.
3412a2d
Update to testing file.
3fdfacb
Update to md5 digests after new build.
3590a17
Changed demultiplexing core usage when paralleled.
7ed4b32
Updates to standard report template.
0ffde31
Update to sequence handling scripts.
a2b911c
Updated usage statements.
e630b2e
Completed revamp of demulti.
a24afb1
Minor update to trim script.
ab27b0b
Added resource management, updated docs, and a few QOL changes.
fe3514a
Minor modification to list_samples to fix null case.
c6f0918
Added new refSeq gene set without model predictions.
426d4f7
Updated simulation config.
081ec89
Coupled input of config and data for report generation and updated te…
7edc7ac 
…sting.
Updated consol and filt with fixes and features.
c4f1abe
Added required function for filtering utility.
55e2b0e
Updated documentation to reflect v0.9.5 changes.
e90deee
Updated docs.
959eea5
@cnobles cnobles merged commit 09b7f40 into master Feb 19, 2019
@cnobles cnobles deleted the update_v0.9.5 branch February 19, 2019 19:46
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@cnobles