Hiya!

I've been trying to run ODP, and am successfully generating the ALG plots, however whenever I try to run the #plot_sp_sp: True to generate synteny plots, I get this error:
MissingInputException in line 289 of .../scripts/odp: Missing input files for rule n_ways_reciprocal_best:
(Bearing in mind I am running an older version of ODP, from the zenodo for Schultz et al 2023, so the error may not be on the same line in the current version)

I have run the exact same pipeline on the data from Schultz et al (2023), where I suiccessfully generated the sp_sp synteny, however on my own data this doesn't work. My config file parameters look like this:

num_permutations: 10000000
ignore_autobreaks: True # Skip steps to find breaks in synteny blocks
diamond_or_blastp: "diamond" # diamond or blastp
plot_LGs: True # Plot the ALGs based on the installed databases
plot_sp_sp: True # Plot the synteny between two species, if False just generates .rbh files

I have also (unsuccessfully) tried with blastp instead of diamond, and without num_permutations. I'm using diamond vers 2.1.9.