Hello,

Firstly, thank you for developing this awesome program. At this point I've successfully run odp/scripts/odp and odp_rbh_to_ribbon without issue, but I'm ultimately interested in odp_genome_rearrangegment_simulation.

I'm working with some annelids, and so I thought I would first try using the BCnS_LGs. What process(es) do I use to make the input rbh file for odp_genome_rearrangegment_simulation, which requires all 4 species? odp/scripts/odp seems to only generate pairwise comparisons.

I also started the finding and characterizing linkage groups process for my species. If I have 4 genomes of interest, should I just do a 4 way comparison for odp_nway_rbh (nways: 4, analyses: ["Sp1", "Sp2", "Sp3","Sp4"])?

Best,
Michelle