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XBB.1 misclassified as XBB in Singapore in samples after 2022-10-10

Status: Open.

#49 In cov-lineages/scorpio;

· mg14 opened on Oct 25, 2022

Pangolin v1.12 as used by GISAID misclassifies a lot of true BA.5* as BA.2*

scorpio

Status: Open.

#48 In cov-lineages/scorpio;

· corneliusroemer opened on Aug 14, 2022

Scorpio: Many BA.4/5 misclassified as BA.2* because "Probable Omicron (BA.2-like)"

scorpio

Status: Open.

#47 In cov-lineages/scorpio;

· corneliusroemer opened on May 2, 2022

Scorpio overriding UShER calls for XD recombinants

scorpio

Status: Open.

#45 In cov-lineages/scorpio;

· SVN-PhD opened on May 2, 2022

Add check that scorpio file is compatible with current scorpio version

enhancementNew feature or requestNew feature or request

Status: Open.

#40 In cov-lineages/scorpio;

· rambaut opened on Dec 9, 2021

Create an optional interspersion statistic

Status: Open.

#10 In cov-lineages/scorpio;

· rmcolq opened on Jun 1, 2021