Scripts used to analyze Drosophila non-coding rna evolution.
- run_tRNAscan-SE_2.09.sh
- countAnticodonsAndIsotypes.sh
- getHighConfidencetRNAs.sh
- getTRNAfa.sh
- getProtfa.sh
- makeOrder.sh
- prepare_ln_command.sh
- ln_command.sh
- getAnchors.sh
- getBlockFasta.sh
- makeDBs.sh
- runBlastnBlastp.sh
- getchrsize.sh
- searchAnchorRegions.sh
- ageDating.sh
- reciprocalRelationship.sh
- getRates.sh
- prepare4SelectionTests.sh
- subset.sh
- originationAnalysis.sh
- chromosome_movement.xlsx
- tRNAEvolution.R
- makeGFF4plotting.sh
- synteny.R
- selection.R
- getStats.sh
- joinWindowedStats.sh
- combineRatioFst.sh