Stars
RNA Structural Covariation Above Phylogenetic Expectation
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
A set of R scripts to identify miRNA against known gene targets using the Targetscan predictions.
miRNA target prediction using TargetScan based on fasta files
predicting the targets of tRNA-derived fragments (tRFs) by SVM and GA
Phylogenomics tutorial based on BUSCO genes
Analysis of GSE118959 circRNAs in LNCaP cell lines
A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org
Nature Methods: RNA foundation model (together with RhoFold)
Program to generate fasta from maf files (multiple alignment files)
Associated code for EvoWeaver publication
Workshop to be given at Bioconductor 2022. We'll be going over conducting comparative genomics analyses using tools in `SynExtend` and `DECIPHER`.
A pipeline for profiling TE-derived small RNAs
Game Boy Advance core for openFPGA on Analogue Pocket
A cross platform front-end GUI of the popular youtube-dl written in wxPython.
A feature-rich command-line audio/video downloader
Inferring natural selection by comparative population genomic analysis across species
R package for analysing site frequency spectra (SFS)
The Monod package fits CME models to sequencing data.
tool for dating gene age by micro- and macro-synteny with high speed and accuracy
Cell2Sentence: Teaching Large Language Models the Language of Biology
GeneWalk identifies relevant gene functions for a biological context using network representation learning