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Official website for Liu Lab

R toolkit for inference and analysis of cell-cell communication from single-cell data

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

my notes for scATACseq analysis

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

Publication Page for Satpathy*, Granja* et al 2019

CellProfiler tutorial pipelines and images

A list of deep learning implementations in biology

ChIP-seq peak-calling, QC and differential analysis pipeline.

Single RNA-seq data analysis with R (Finland, May, 2019)

Single Nucleus Analysis Pipeline for ATAC-seq

Cell-cell communication and lineage inference for scRNA-seq data

Harvard FAS informatics scRNAseq workshop website

Python机器学习体系构建教程

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Analysis pipeline for ATAC-seq Data

Data and analysis scripts for our Embryo Timecourse paper.

Course material for "BIOS 201: Next-generation sequencing and applications"

A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.

Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.