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  1. remag remag Public

    REcovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eukaryotic genomes from mixed prokaryotic-eukaryotic samples.

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  2. wsgups wsgups Public

    Files for the pipeline Whole-genome Screening of Genes Under Positive Selection.

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  3. NLP4Pheno NLP4Pheno Public

    NLP4Pheno: Bacterial Phenotype Prediction Pipeline

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    Phylogenetics part for the Hands on Microbiology course.

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  5. lspred lspred Public

    LSpred is a model to predict lifestyle in plant pathogenic organims based on genomic information.

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  6. amypred amypred Public

    Snakemake pipeline to perform amyloid prediction on a set of proteins in fasta format.

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