Online variational Bayes for latent Dirichlet allocation (LDA)

This is a C implementation of variational EM for latent Dirichlet allocation (LDA), a topic model for text or other discrete data.

Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

Python port of "Common statistical tests are linear models" by Jonas Kristoffer Lindeløv.

Processing pipelines for the HCP

This is a source code for producing results in the "Predicting Dementia in Parkinson's Disease Patients" accepted to npj Parkinson's Disease

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macro…

PALM: Permutation Analysis of Linear Models

Statistical NonParametric Mapping, development version

Harmonization of multi-site imaging data with ComBat (Python)

Harmonization of multi-site imaging data with ComBat

Matlab tools for running M/EEG analyses - NO LONGER SUPPORTED - Please use Python Version Instead: https://github.com/OHBA-analysis/osl-ephys

Task-Evoked Dynamic Network Analysis through Hidden Markov Modelling

Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.

Version 2 of the minc-toolkit, uses tools based on ITK version 4.x

agent-based S-I-R model for neurodegeneration

Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

Multiple Automatically Generated Templates brain segmentation algorithm

A package for publication-ready brain surface figures

Useful tools from the Network Neuroscience Lab

Code for the myconnectome project

Abstracts/Posters presented at the 28th Annual Meeting of the Organization for Human Brain Mapping

A pythonic 3D viewer to visualize and plot brains and neuroimaging data

Group ICA/IVA software (MATLAB)

Toolbox for segmentation and characterisation of transient connectivity

Repository for the ICON 2017 hackathon 'multivoxel pattern analysis (MVPA) of fMRI data in Python'