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Achievement: StarstruckAchievement: Pull Sharkx2Achievement: Pair Extraordinaire

Achievements

Achievement: StarstruckAchievement: Pull Sharkx2Achievement: Pair Extraordinaire

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@lignum-vitae

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dawnandrew100/README.md

Hi there! Welcome to my page!

I am a Bioinformatics and Computational Biology PhD student originally from The Bahamas on a journey through the world of computers and programming languages! Come along on this journey with me to explore the wonderful world of software!

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My open source projects

Bioinformatics

  • Seq.rs: website showcasing the use of Rust in Bioinformatics
  • Goombay: sequence alignment tool containing local alignment, global alignment, MSA, and clustering algorithms
  • Biobase: tool to parse, analyse, and access biological sequence data, amino acid properties, and substitution matrices.
  • Spindalis: bioinformatics library for numerical modeling, optimisation, data analysis, and simulation

Data Processing

  • Pyrolysate: tool to parse and validate URLs and emails with structured output in JSON, CSV, or text
  • PebbleNet: retrieves and processes environmental datasets with output to JSON

My Gists

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Pinned Loading

  1. seq.rs seq.rs Public

    Bioinformatics in Rust monthly

    Markdown 19 1

  2. seqrs-challenges seqrs-challenges Public

    A home for Rust solutions to all of the monthly seq.rs challenges.

    Rust 2 1

  3. lignum-vitae/goombay lignum-vitae/goombay Public

    Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying m…

    Python 12 3

  4. lignum-vitae/biobase lignum-vitae/biobase Public

    A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

    Python 10 3

  5. Bioinformatics Bioinformatics Public

    code solutions to Bioinformatics questions in various programming languages

    Python

  6. lignum-vitae/spindalis lignum-vitae/spindalis Public

    A bioinformatics-focused library for numerical modeling, optimisation, data analysis, and simulation written in Rust

    Rust 3 2