-
schist Public
An interface for Nested Stochastic Block Model for single cell analysis
-
-
mofapy2 Public
Forked from bioFAM/mofapy2Multi-omics factor analysis v2
Python GNU Lesser General Public License v3.0 UpdatedMay 15, 2025 -
schist-feedstock Public
Forked from conda-forge/schist-feedstockA conda-smithy repository for schist.
BSD 3-Clause "New" or "Revised" License UpdatedMar 18, 2025 -
scGET Public
Forked from leomorelli/scGETPython BSD 3-Clause "New" or "Revised" License UpdatedJan 10, 2024 -
sinto Public
Forked from timoast/sintoTools for single-cell data processing
Python MIT License UpdatedSep 7, 2023 -
UMI-tools Public
Forked from CGATOxford/UMI-toolsTools for handling Unique Molecular Identifiers in NGS data sets
Python MIT License UpdatedSep 6, 2023 -
ecosystem-packages Public
Forked from scverse/ecosystem-packagesRegistry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 17, 2023 -
scanpy Public
Forked from scverse/scanpySingle-Cell Analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 11, 2023 -
scikit-fusion Public
Forked from mims-harvard/scikit-fusionscikit-fusion: Data fusion via collective latent factor models
Python Other UpdatedAug 10, 2023 -
tensorly Public
Forked from tensorly/tensorlyTensorLy: Tensor Learning in Python.
Python Other UpdatedMay 26, 2023 -
-
fit_nbinom Public
Forked from gokceneraslan/fit_nbinomNegative binomial maximum likelihood estimate implementation in Python using L-BFGS-B
Python UpdatedJan 27, 2022 -
SurpriseMeMore Public
Forked from EmilianoMarchese/SurpriseMeMoreModule to detect mesoscale structures (community, core-periphery, bipartite) on Graphs and Multigraphs using surprise.
Python MIT License UpdatedJan 24, 2022 -
cellrank Public
Forked from theislab/cellrankCellRank for directed single-cell fate mapping
-
schist-notebooks Public
Some example notebooks for scNSBM package
-
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 29, 2021 -
HiCExplorer Public
Forked from deeptools/HiCExplorerHiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Python GNU General Public License v3.0 UpdatedJun 23, 2021 -
SBMCommunityDetection Public
Forked from aladinD/SBMCommunityDetectionJupyter Notebook UpdatedJun 22, 2021 -
-
scTips_Twitter Public
Some random code about single cell stuff to share with my Tweeps
-
scikit-bio Public
Forked from scikit-bio/scikit-bioscikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 21, 2020 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedJul 6, 2020 -
dawe.github.io Public
Forked from daattali/beautiful-jekyllBuild a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
HTML MIT License UpdatedJun 3, 2020 -
-
MOFA Public
Forked from bioFAM/MOFAMulti-Omics Factor Analysis
R GNU Lesser General Public License v3.0 UpdatedOct 8, 2019 -
kallisto Public
Forked from pachterlab/kallistoNear-optimal RNA-Seq quantification
C BSD 2-Clause "Simplified" License UpdatedSep 9, 2019 -
anndata Public
Forked from scverse/anndataAnnotated data matrix.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 28, 2017 -
{{ message }}