Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Versatile open-source tool for microbiome analysis

Quickly search, compare, and analyze genomic and metagenomic data sets.

A robust and fast clustering method for amplicon-based studies

Smith-Waterman database searches with inter-sequence SIMD parallelisation

micca - MICrobial Community Analysis

minepy - Maximal Information-based Nonparametric Exploration