A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

A crate for working with genomics chain files.

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Simple test framework for Nextflow pipelines

Free and Open Source Machine Translation API. Self-hosted, offline capable and easy to setup.

Transcribe any audio to text, translate and edit subtitles 100% locally with a web UI. Powered by whisper models!

A natural language interface for computers

bioinformatics toolkit in rust

A Rust crate for cooking up terminal user interfaces (TUIs) 👨‍🍳🐀 https://ratatui.rs

🔥 End-to-end encrypted cloud for everything.

A massively parallel, high-level programming language

Bioinformatics I/O libraries in Rust

Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

A very fast interval tree data structure

A Rust library and command line tool for working with genomic ranges and their data.

This is a repository to host data visualizations

Safe rust wrapper around CUDA toolkit

An API Client package to access the APIs for NBA.com

This Snakemake pipeline implements the GATK best-practices workflow

Get up and running with OpenAI gpt-oss, DeepSeek-R1, Gemma 3 and other models.

More efficient tidyverse code, using polars in the background

On-demand containers provisioning service

MediaCMS is a modern, fully featured open source video and media CMS, written in Python/Django and React, featuring a REST API.

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

Simple test framework for Nextflow pipelines

🔬 BEDOPS: high-performance genomic feature operations

bedtools - the swiss army knife for genome arithmetic

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)