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Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Related Projects

Benchmarks

Please see the benchmarks README for more information.

About

Exon is an OLAP query engine specifically for biology and life science applications.

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  • Rust 92.6%
  • Python 6.0%
  • R 1.1%
  • Shell 0.2%
  • Makefile 0.1%
  • Dockerfile 0.0%