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4.4.0

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@jordibc jordibc released this 03 Sep 14:29
· 8 commits to ete4 since this release

The main change is the use of a high-performance multithreaded http server for the backend (cheroot wsgi server, instead of our old wsgiref.simple_server). This allows the use of ete to serve efficiently many users at the same time.

Some fixes:

  • order of headers in aligned panels work the same and well in all browsers
  • multiple headers will not overlap now (not even a little), and their underlines have the exact size (do not extend to infinity)
  • faces zoom correctly in aligned panels
  • t.render_sm() (render with smartview) draws the full tree expanded by default
  • updated and fixed examples in the examples directory
  • minor corrections in closest_leaf() and related functions

Some additions:

  • SeqFace accepts marking some positions
  • t.distance_matrix() (faster and supersedes t.cophenetic_matrix())
  • examples of extending the server api
  • net_relatedness_index() and nearest_taxon_index()

Full Changelog since previous release: 4.3.0...4.4.0

Also available in PyPI: https://pypi.org/project/ete4/

The updated documentation can be found at https://etetoolkit.github.io/ete/