laser dye max/msp patches

A collection of color palettes inspired by plants and pop culture.

This repo collects the list of learning online resources related to microbiome computational science and tools.

Automated Explainable AI for Omics

Repository containing data, code and figures used for the manuscript

Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases

muon is a multimodal omics Python framework

TPMI Data QC

Partners Biobank genomics data QC

Using R language in microbiome analysis

R package for benchmarking single cell analysis methods

This contains the dataset for comparing scRNA-seq analysis methods

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Jos…

Batch effects removal for microbiome data via conditional quantile regression

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

Course schedule and labs for QTM 490: Feminist Data Science (Emory University)