A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.

an updated version of mFastSeq originally written by Peter Ulz (uses Python3 and multiprocessing; several problematic chromosome arms are excluded from the analysis)

Nextflow runs monitoring and organisation UI

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can…

VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and …

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Grow your own Christmas tree within R using tree architectural models

Interactively annotate ggplots

Influenza genome analysis Nextflow workflow

Enhancing {ggplot2} plots with statistical analysis 📊📣

Evaluación del impacto del proceso de rarefacción en la detección de comunidades microbianas en datos de amplicones ARNr 16S

A bioinformatic pipeline for ultra-fast analysis of cfDNA using Oxford Nanopore Technologies sequencing.

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.

Easy installation for INSaFLU made by docker

Ximmer is a system for CNV calling on exome and targeted genomic sequencing

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

Automatic Generation of Visualizations and Infographics using Large Language Models

Rapid and accurate ancestry inference using SNVs.

web-based analysis tool for rare disease genomics

A bioinformatics pipeline to phase and impute genetic data

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

Map genetic variants and protein positions to protein interfaces in 3D

A pipeline for running AMRfinderPlus and collating results into functional classes

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"