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FlashRNA - An Efficient Model for Regulatory Genomics
Analyses related to the Borzoi paper.
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
Genome modeling and design across all domains of life
AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt pretrained models and generate finetuned models for downstr…
Import a Slack export into a Discord server
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
For fine-tuning Enformer using paired WGS & gene expression data
Sequential regulatory activity predictions with deep convolutional neural networks.
RiboNN: predicting translation efficiencies from mRNA sequences
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout
WashU Epigenome Browser (3rd generation, since 2025)
BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
This project aims to collect the latest "call for reviewers" links from various top CS/ML/AI conferences/journals
Top open source software from the top 50 pharmaceutical companies
⚡ TabPFN: Foundation Model for Tabular Data ⚡
A modular framework for multimodal cross-cell-type transcriptional regulation models
accurate prediction of promoter activity and variant effects from massive parallel reporter assays
Chai-1, SOTA model for biomolecular structure prediction
A pipeline to build similarity maps of protein space