In a couple of days where will be an update!

Bioinformatic tool which extract every domain annotated by InterProScan

• Python3
• pip

Install the required Python packages; while you are in the project's root directory run the following command:

# Install requirements
pip install -r requirements.txt

In terminal, run the following command. By default, this will only retrieve Bulbasaur.

# Run Cuterle
python3 main.py

Once you run main.py in terminal, the program request the two input file (~.tsv and ~.fasta)

Output from the inputs above (extracted_domains.fasta)

Sorted randomly, here we have the next possible feature of Cuterle:

TOP PRIORITY

• Enable python argument command line to be bash script friendly (work in progress)

OTHER

• Nicer interface (only at the end)

• Draw a schematic protein with the domains draw up (potentially done)

• List all the domain extracted in decrescent order (done)

• Possibily of choice for the order of domain (decrescent order for number of domain or for the id?)

• Sort the domain extracted for each sequence in crescent order

• Choice the domain of interest to be saved in the output file

• Print max 10 item from the files' list in the folder

• Maybe a folder "Input/Output" or "Workinprogress" to save every files